Papers
More info on my Google Scholar profile
2018
- Ellis SE, Collado-Torres L, Jaffe AE, Leek JT (2018) Improving the value of public RNA-seq expression data by phenotype prediction. Nucleic Acids Research. [link]
2017
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Andrews SV, Ellis SE, Bakulski KM, Sheppard B, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Feinberg AP, Arking DE, Ladd-Acosta C, Fallin MD (2017) Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder. Nature Communications. [link]
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Ellis SE and Leek JT (2017) How to share data for collaboration. The American Statistician. [link]
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Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA Hansen KD, Jaffe AE, Langmead B, Leek JT (2017) Reproducible RNA-seq analysis using recount2. Nature Biotechnology doi: 10.1038/nbt.3838 [link] [database] [reproducible analysis] [software]
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Ellis SE, Gupta S, Moes A, West AB, Arking DE (2017) Exaggerated CpH Methylation in the Autism-Affected Brain. Molecular Autism doi: 10.1186/s13229-017-0119-y [link]
2016
- Ellis SE, Panitch R, West AB, Arking DE (2016) Transcriptome analysis of cortical tissue reveals shared sets of downregulated genes in autism and schizophrenia. Translational Psychiatry doi: 10.1038/tp.2016.87 [link]
2015
- Huang, Haritunas, Okou, et al. (2015) Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans. Gastroenterolgy doi: 10.1053/j.gastro.2015.07.065 [link]
2014
- Gupta S, Ellis SE, Ashar FN, Moes A, Baser JS, Zhan J, West AB, Arking DE (2014) Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism. Nature Communications doi: doi:10.1038/ncomms6748 [link]
2013
- Ellis SE, Gupta S, Ashar FN, Bader JS, West AB, Arking DE. (2013) RNA-Seq optimization with eQTL gold standards. BMC Genomics doi: 10.1186/1471-2164-14-892 [link]